+43 (1) 58801 - 166 500
ckubicek@mail.tuwien.ac.at
http://www.vt.tuwien.ac.at

A. International, refereed Journals

1977

1. Kubicek, C.P., Röhr, M. (1977) Influence of manganese on enzyme synthesis and citric acid accumulation in Aspergillus niger. Eur. J. Appl. Microbiol. Biotechnol. 4, 167 - 173

1978

2. Kubicek, C.P., Röhr, M. (1978) The role of the tricarboxylic acid cycle in citrate accumulation by Aspergillus niger.Eur. J. Appl. Microbiol. Biotechnol. 5, 263 - 271

1979

3. Habison, A., Kubicek, C.P., Röhr, M. (1979) Phosphofructokinase as a regulatory enzyme in citric acid accumulating Aspergillus niger. FEMS Microbiol. Letts. 5, 39 - 42

4. Orthofer, R., Kubicek, C.P., Röhr, M. (1979) Lipid levels and manganese deficiency in citric acid producing strains of Aspergillus niger. FEMS Microbiol. Letts. 5, 403 - 406

5. Kubicek, C.P., Zehentgruber, O., Röhr, M. (1979) An indirect method for studying fine control of citric acid accumulation by Aspergillus niger. Biotechnol. Letts. 1, 47 - 52

6. Röhr, M., Stadler, P.J., Salzbrunn, W.O.J., Kubicek, C.P. (1979) An improved method for characterization of citrate production in conidia of Aspergillus niger. Biotechnol. Letts. 1, 281- 286

7. Kubicek, C.P., Hampel, W.A., Röhr, M. (1979) Manganese deficiency leads to elevated amino acid pool levels in citric acid accumulating Aspergillus niger. Arch. Microbiol. 123, 73 - 79

1980

8. Führer, L., Kubicek, C.P., Röhr, M. (1980) Pyridine nucleotide levels and ratios in Aspergillus niger. Can. J. Microbiol. 26, 405 - 408

9. Kubicek, C.P., Zehentgruber, O., El-Kalak, H., Röhr, M. (1980) Regulation of citric acid production in Aspergillus niger by oxygen: the effect of dissolved oxygen tension on adenylate levels and respiration. Eur. J. Appl. Microbiol. Biotechnol. 9, 101 - 115

10. Kubicek, C.P., Röhr, M. (1980) Regulation of citrate synthase from the citric acid producing fungus Aspergillus niger. Biochim. Biophys. Acta 615, 449 - 457

11. Zehentgruber, O., Kubicek, C.P., Röhr, M. (1980) Alternate oxidase in Aspergillus niger. FEMS Microbiol. Letts. 8, 71 - 74

12. Kisser, M., Kubicek, C.P., Röhr, M. (1980) Influence of manganese on morphology and cell wall composition in Aspergillus niger during citric acid fermentation. Arch. Microbiol. 128, 26 - 33

1981

13. Ma, H., Kubicek, C.P., Röhr, M. (1981) Malate dehydrogenase isoenzymes in Aspergillus niger. FEMS Microbiol. Letts. 12, 34 - 37

14. Röhr, M., Kubicek, C.P. (1981) Regulatory aspects of citric acid fermentation by Aspergillus niger. Proc. Biochem. 16, 34 - 37

15. Kubicek, C.P. (1981) Release of carboxymethyl-cellulase and ß-glucosidase from the cell walls of Trichoderma reesei. Eur. J. Appl. Microbiol. Biotechnol. 13, 226 - 231

16. Röhr, M., Zehentgruber, O., Kubicek, C.P. (1981) Kinetics of biomass formation and citric acid production by Aspergillus niger on a pilot plant scale. Biotechnol. Bioengin. 23, 2433 - 2445

1982

17. Kubicek, C.P. (1982) ß-Glucosidase excretion by Trichoderma pseudokoningii: correlation with cell wall bound ß-1,3-glucanase activities. Arch. Microbiol. 132, 349 - 354

18. Kubicek, C.P., Pitt, D.E. (1982) Effect of dilution rate on ß-glucosidase secretion and cell wall metabolism in Trichoderma aureoviride cultivated in a continuous airlift fermenter. Eur. J. Appl. Microbiol. Biotechnol. 16, 189 - 196

1983

19. Kubicek, C.P. (1983) ß-Glucosidase excretion in Trichoderma strains with different cell wall bound ß-1,3-glucanase activities. Can. J. Microbiol. 29, 163 - 169

20. Habison, A., Kubicek, C.P., Röhr, M. (1983) Partial purification and regulatory properties of phosphofructokinase from Aspergillus niger. Biochem. J. 209, 669 - 676

21. Ditzelmüller, G., Kubicek, C.P., Wöhrer, W., Röhr, M. (1983) Nucleotide pools of growing, synchronized and stressed cultures of Saccharomyces cerevisiae. Arch. Microbiol. 135, 63 - 67

22. Kubicek, C.P. (1983) Influence of sorbose on the location of ß-glucosidases in Trichoderma pseudokoningii. FEMS Microbiol. Letts. 20, 285 - 288

23. Harrer, W., Kubicek, C.P., Röhr, M., Wurth, J., Marihart, J. (1983) The effect of carboxymethylcellulose addition on extracellular enzyme formation by Trichoderma pseudokoningii. Eur. J. Appl. Microbiol. Biotechnol. 17, 339 - 343

24. Röhr, M., Kubicek, C.P., Zehentgruber, O., Orthofer, R. (1983) A balance of oxygen and carbon conversion rates during pilot plant citric acid fermentation by Aspergillus niger. Int J Microbiol. 1, 19 - 25

1984

25. Meixner-Monori, B., Kubicek, C.P., Röhr, M. (1984) Pyruvate kinase from Aspergillus niger: a regulatory enzyme in glycolysis? Can. J. Microbiol. 30, 16 - 23

26. Mischak, H., Kubicek, C.P., Röhr, M. (1984) Citrate inhibition of glucose uptake in Aspergillus niger. Biotechnol. Letts. 6, 425 - 430

27. Ditzelmüller, G., Kubicek, C.P., Wöhrer, W., Röhr, M. (1984) Xylose metabolism in Pachysolen tannophilus: purification and properties of aldose reductase. Can. J. Microbiol. 30, 1330 - 1336

28. Ditzelmüller, G., Kubicek, C.P., Wöhrer, W., Röhr, M. (1984) Xylitol dehydrogenase from Pachysolen tannophilus. FEMS Microbiol. Letts. 25, 195 - 198

1985

29. Mischak, H., Kubicek, C.P., Röhr, M. (1985) Formation and location of glucose oxidase by citric acid producing mycelia of Aspergillus niger. Appl. Microbiol. Biotechnol. 21, 27 - 31

30. Meixner-Monori, B., Kubicek, C.P., Habison, A., Kubicek-Pranz, E.M., Röhr, M. (1985) The presence and regulation of the a-ketoglutarate dehydrogenase multienzyme complex in the filamentous fungus Aspergillus niger. J. Bacteriol. 161, 265 - 271

31. Meixner, O., Mischak, H., Kubicek, C.P., Röhr, M. (1985) Manganese deficiency and membrane lipid composition of citric acid producing Aspergillus niger. FEMS Microbiol. Letts. 26, 271 - 274

32. Ma, H., Kubicek, C.P., Röhr, M. (1985) Metabolic effects of manganese deficiency in Aspergillus niger: evidence for increased protein degradation. Arch. Microbiol. 141, 266 - 268

33. Kolar, H., Mischak, H., Kammel, W.P., Kubicek, C.P. (1985) Carboxymethylcellulase and ß-glucosidase secretion by protoplasts of Trichoderma reesei. J. Gen. Microbiol. 131, 1339 - 1347

34. Kammel, W.P., Kubicek, C.P. (1985) Absence of postsecretional modification of extracellular proteins during growth of Trichoderma reesei on cellulose. J. Appl. Biochem. 7, 138 - 144

35. Ditzelmüller, G., Kubicek-Pranz, E.M., Röhr, M., Kubicek, C.P. (1985) NADPH-specific and NADH-specific xylose reduction is catalyzed by two separate enzymes in Pachysolen tannophilus. Appl. Microbiol. Biotechnol. 22, 297 - 299

36. Kubicek, C.P., Röhr, M. (1985) Aconitase and citric acid fermentation in Aspergillus niger. Appl. Environ. Microbiol. 50, 1339 - 1341

37. Jaklitsch, W.M., Röhr, M., Kubicek, C.P. (1985) Glutamate pools and glutamate dehydrogenase regulation in relation to penicillin biosynthesis in strains of Penicillium chrysogenum. Exp. Mycol. 9, 310 - 317

1986

38. Schreiber, G., Kolar, H., Foisner, R., Kubicek, C.P. (1986) Choline stimulates synthesis of extracellular proteins in Trichoderma reesei. Arch. Microbiol. 144, 41 - 47

39. Meixner-Monori, B., Kubicek, C.P., Harrer, W., Schreferl, G., Röhr, M. (1986) NADP-specific isocitrate dehydrogenase from the citric acid accumulating fungus Aspergillus niger. Biochem. J. 236, 549 - 557

40. Jaklitsch, W.M., Hampel, W., Röhr, M., Kubicek, C.P., Gamerith, G. (1986) -a-Aminoadipate pool concentration and penicillin biosynthesis in strains of Penicillium chrysogenum. Can. J. Microbiol. 32, 473 - 480

41. Umile, C., Kubicek, C.P. (1986) A constitutive, plasma-membrane bound ß-glucosidase in Trichoderma reesei. FEMS Microbiol. Letts. 34, 291 - 295

42. Kubicek, C.P., Röhr, M. (1986) The citric acid fermentation.CRC Crit. Rev. Biotechnol 3, 331 - 373

43. Schreferl, G., Kubicek, C.P., Röhr, M. (1986) Inhibition of citric acid accumulation by manganese ions in Aspergillus niger mutants with reduced citrate control of phosphofructokinase. J. Bacteriol. 165, 1019 - 1022

1987

44. Kubicek, C.P., Panda, T., Schreferl-Kunar, G., Gruber, F., Messner, R. (1987) O-linked but not N-linked glycosylation is necessary for the secretion of endoglucanases I and II by Trichoderma reesei. Can. J. Microbiol. 33, 698 - 703

45.Panda, T., Gruber, H., and Kubicek, C.P. (1987) Stimulation of protein secretion in Trichoderma reesei by Tween surfactants is not correlated with changes in enzyme location or membrane fatty acid composition. FEMS Microbiol. Letts. 41, 85 - 90

45. Kubicek, C.P. (1987) Involvement of a conidial endoglucanase and a plasma-membrane bound ß-glucosidase in the induction of endoglucanase synthesis by cellulose in Trichoderma reesei. J. Gen. Microbiol. 133, 1481 - 1487

46. Röhr, M., Kubicek, C.P., Zehentgruber, O., Orthofer, R. (1987) Accumulation and partial reconsumption of polyols during citric acid fermentation by Aspergillus niger. Appl. Microbiol. Biotechnol. 27, 235 - 239

47. Pfitzner, A., Kubicek, C.P., Röhr, M. (1987) Presence and regulation of ATP:citrate lyase from the citric acid producing fungus Aspergillus niger. Arch. Microbiol. 147, 88 - 91

48. Arts, E., Kubicek, C.P., Röhr, M. (1987) Regulation of phosphofructokinase from Aspergillus niger: effect of fructose-2,6-bisphosphate on the action of citrate, amonium ions and AMP. J. Gen. Microbiol. 133, 1195 - 1199

49. Jaklitsch, W.M., Röhr, M., Kubicek, C.P. (1987) Lysine biosynthesis in Penicillium chrysogenum: regulation by general amino acid control and absence of lysine repression. Exp. Mycol. 11, 141 - 147

1988

50. Kubicek, C.P. (1988) Regulatory aspects of the tricarboxylic acid cycle in filamentous fungi - a review. Trans.Brit. Mycol. Soc. 90, 339 - 349

51. Kubicek, C.P., Schreferl-Kunar, G., Wöhrer, W., Röhr, M. (1988) Evidence for a cytoplasmic pathway of oxalate biosynthesis in Aspergillus niger. Appl. Environ. Microbiol. 54, 633 - 637

52. Kubicek, C.P., Mühlbauer, G., Grotz, M., John, E., Kubicek-Pranz, E.M. (1988)Properties of a conidial bound cellulase enzyme system from Trichoderma reesei. J. Gen. Microbiol. 134: 1215 - 1222

53. Messner, R., Kubicek, C.P. (1988) Intracellular precursers of endo-ß-1,4-glucanases in Trichoderma reesei. FEMS Microbiol. Letts. 50: 227 - 232

54. Messner, R., Gruber, F., Kubicek, C.P. (1988) Differential regulation of synthesis of multiple forms of specific endoglucanases by Trichoderma reesei QM 9414. J. Bacteriol. 170: 3689 - 3693

55. Hönlinger, C., Hampel, W.A., Röhr, M., Kubicek, C.P. (1988) Differential effects of general amino acid control of lysine biosynthesis on penicillin formation in strains of Penicillium chrysogenum. J. Antibiot. 41, 255 - 257

1989

56. Xu, D.B., Röhr, M., Kubicek, C.P. (1989) A comparison of factors influencing citric acid production by Aspergillus niger in submerged culture and on filter paper discs. Appl. Microbiol. Biotechnol. 30: 444 - 450

57. Xu, D.B., Madrid, C.P., Röhr, M., Kubicek, C.P. (1989) The influence of type and concentration of the carbon source on the production of citric acid by Aspergillus niger. Appl. Microbiol. Biotechnol. 30: 553 - 561

58. Schreferl-Kunar, G., Grotz, M., Röhr, M., Kubicek, C.P. (1989) Citric acid production by Aspergillus niger mutants with increased glycolytic capacity. FEMS Microbiol. Letts. 59: 297 - 300

59. Xu, D.B., Röhr, M., Kubicek, C.P. (1989) Cyclic AMP levels in Aspergillus niger do not correlate with citric acid accumulation and are not influenced by manganese deficiency..Appl. Microbiol. Biotechnol. 32: 124 - 128

60. Affenzeller, K., Hönlinger, C., Jaklitsch, W.M., Kubicek, C.P. (1989) Lysine biosynthesis in Penicillium chrysogenum is regulated by feedback inhibition of a-aminoadipate reductase. FEMS Microbiol. Letts. 58, 293 - 298

61. Hönlinger, C., Kubicek, C.P. (1989) Regulation of Ù-(L-a-aminoadipyl)-L-cysteinyl-D-valine and isopenicillin N biosynthesis in Penicillium chrysogenum by the a--aminoadipate pool size. FEMS Microbiol. Letts. 65, 71 - 76

62. Hönlinger, C., Kubicek, C.P. (1989) Metabolism and compartmentation of a--aminoadipate in penicillin producing strains of Penicillium chrysogenum. Biochim. Biophys. Acta 993, 204 - 211

63. Mischak, H., Hofer, F., Messner, R., Weissinger, E., Hayn,M., Tomme, P., Esterbauer, H.,Küchler, E., Claeyssens, M., Kubicek, C.P. (1989) Monoclonal antibodies against different domains of cellobiohydrolase I and II from Trichoderma reesei. Biochim. Biophys. Acta 990, 1 - 7

64. Iyayi, C.B., Bruchmann, E.-E., Kubicek, C.P. (1989) Induction of cellulase formation in Trichoderma reesei by cellobiono-1,5-lactone. Arch. Microbiol. 151, 326 - 330

65. Kruszewska, J., Messner, R., Kubicek, C.P., Palamarczyk, G. (1989) 0-glycosylation of proteins by membrane fractions of Trichoderma reesei. J. Gen. Microbiol. 135, 301 - 307

66. Hofer, F., Weissinger, E., Mischak, H., Messner, R., Meixner-Monori, B., Blaas, D., Visser, J., Kubicek, C.P. (1989) A monoclonal antibody against the alkaline extracellular ß-glucosidase from Trichoderma reesei: reactivity with other Trichoderma ß-glucosidases. Biochim. Biophys. Acta 992, 298 - 306

67. Schneider, H., Lee, H., Barbosa, M.F.S., Kubicek, C.P., James, A.P. (1989) Physiological properties of a mutant of Pachysolen tannophilus deficient in NADPH-dependent D-xylose reductase. Appl. Environ. Microbiol. 55, 2877 - 2881

68. Hagspiel, K., Haab, D., Kubicek, C.P. (1989) Protease activity and proteolytic modifications of cellulases from a Trichoderma reesei QM 9414 selectant. Appl. Microbiol. Biotechnol. 32, 61 - 67

1990

69. Kubicek-Pranz, E.M., Mozelt, M., Röhr, M., Kubicek, C.P. (1990) Changes in the concentration of fructose-2,6-bisphosphate in Aspergillus niger during stimulation of acidogenesis by elevated sucrose concentrations. Biochim Biophys Acta 1033, 250 - 255

70. Messner, R., Kubicek, C.P. (1990) Evidence for a single, specific ß-glucosidase in cell walls from Trichoderma reesei QM 9414. Enzyme Microb. Technol. 12, 685 - 690

71. Messner, R., Kubicek, C.P. (1990) Synthesis of cell wall glucan, chitin, and protein by regenerating protoplasts and mycelia of Trichoderma reesei. Can. J. Microbiol. 36, 211 - 217

72. Messner, R., Hagspiel, K., Kubicek, C.P. (1990) Isolation of a ß-glucosidase binding and activating polysaccharide from cell walls of Trichoderma reesei. Arch. Microbiol. 154, 150 - 155

73. Haab, D., Hagspiel, K., Szakmary, K., Kubicek, C.P. (1990) Formation of the extracellular proteases from Trichoderma reesei QM 9414 involved in cellulase degradation. J Biotechnol 16, 187 - 198

74. Kruszewska, J., Palamarczyk, G., Kubicek, C.P. (1990) Stimulation of exoprotein secretion by choline and Tween 80 in Trichoderma reesei QM 9414 correlates with increased activities of dolichol phosphate mannose synthase. J. Gen. Microbiol. 136, 1293 - 1298

75. Strauss,J., Kubicek, C.P. (1990) ß-Glucosidase and cellulase formation by a Trichoderma reesei mutant defective in constitutive ß-glucosidase formation. J. Gen. Microbiol. 136, 1321 - 1326

76. Jaklitsch, W.M., Kubicek, C.P. (1990) Homocitrate synthase from Penicillium chrysogenum: subcellular localization, purification of the cytosolic isoenzyme and sensitivity to lysine. Biochem. J. 269, 247 - 253

77. Allmaier, G., Schmid, E.R., Hagspiel, K., Kubicek, C.P., Karas, M., Hillenkamp, F. (1990) Strategy for the characterization of the glycoprotein endoglucanase I isolated from Trichoderma reesei: combination of plasma desorption and laser desorption time-of-flight mass spectrometry. Anal. Chim. Acta. 241, 321 - 327

78. Kolbe, J., Kubicek, C.P. (1990) Quantification and identification of the main components of the Trichoderma cellulase complex with monoclonal antibodies using an enzyme linked immunosorbent assay (ELISA). Appl. Microbiol. Biotechnol. 34, 26 - 30

79. Gruber, F., Visser, J., Kubicek, C.P., De Graaff, L. (1990) The development of a heterologous transformation system for the cellulolytic fungus Trichoderma reesei based on a pyrG negative strain. Curr. Genet. 18, 71 - 76

80. Gruber, F., Visser, J., Kubicek, C.P., De Graaff, L. (1990) Cloning of the Trichoderma reesei pyrG gene and its use as a homologous marker for a high-frequency transformation system. Curr. Genet. 18, 451 - 456

81. Kubicek-Pranz, E.M., Steiner, M., Kubicek, C.P. (1990) Stimulatory effect of oxidized cellulose on cellulase formation by Trichoderma reesei. FEMS Microbiol Letts 68, 273 - 278

82. Fritscher, C., Messner, R., Kubicek, C.P. (1990) Cellobiose metabolism and cellobiohydrolase I biosynthesis by Trichoderma reesei. Exp. Mycol. 14, 451 - 461

1991

83. Kubicek-Pranz, E.M., Vollenhofer, S.K., Fritscher, C., Plicka, A., Hampel, W.A., Kubicek, C.P. (1991) Hexose-phosphorylating enzyme activities and carbon catabolite control of cellulase formation in Trichoderma reesei QM 9414 and some partially constitutive cellulase producer strains. Enzyme Microb. Technol. 13, 39 - 44

84. Luderer, M.E.H., Hofer, F., Hagspiel, K., Allmaier, G., Blaas, D., Kubicek, C.P. (1991) A re-appraisal of multiplicity of endoglucanase I from Trichoderma reesei using monoclonal antibodies and plasma desorption mass spectrometry. Biochim Biophys Acta 1076, 427 - 434

85. Luef, E., Prey, T., Kubicek, C.P. (1991) Zinc biosorption by fungal waste mycelia. Appl. Microbiol. Biotechnol. 34: 688 - 692

86. Messner, R., Kubicek, C.P. (1991) Carbon source control of cellobiohydrolase I and II formation by Trichoderma reesei. Appl. Environ. Microbiol. 57, 630 - 635

87. Jaklitsch, W.M., Kubicek, C.P., Scrutton, M.C. (1991)Subcellular localization of enzymes of itaconate biosynthesis in Aspergillus terreus. J. Gen. Microbiol. 137, 533 - 539

88. Messner, R., Kubicek-Pranz, E.M., Gsur, A., Kubicek, C.P. (1991) Cellobiohydrolase II is the main conidial bound cellulase in Trichoderma reesei and other Trichoderma strains. Arch. Microbiol. 155, 601 - 606

89. Kruszewska, J., Palamarczyk, G., Kubicek, C.P. (1991) Mannosyl phospho dolichol synthase from Trichoderma reesei is activated by protein kinase dependent phosphorylation in vitro. FEMS Microbiol. Letts. 80, 81 - 86

90. Kubicek-Pranz, E.M., Gruber, F., Kubicek, C.P. (1991) Transformation of Trichoderma reesei with the cellobiohydrolase II gene as a means for obtaining strains with increased cellulase production and specific activity. J. Biotechnol. 20, 83 - 94

91. Jaklitsch, W.M., Kubicek, C.P., Scrutton, M.C. (1991) Intracellular organisation of citrate production in Aspergillus niger. Can. J. Microbiol. 37, 823 - 827

92. Affenzeller, K., Kubicek, C.P. (1991) Evidence for a compartmentation of amino acids in penicillin biosynthesis in Penicillium chrysogenum strains. J. Gen. Microbiol. 137, 1653 - 1660

93. Steinböck, F.A., Held, I., Choojun, S., Harmsen, H., Röhr, M., Kubicek-Pranz, E.M., Kubicek, C.P. (1991) Regulatory aspects of carbohydrate metabolism in relation to citric acid accumulation by Aspergillus niger. Acta Biotechnol. 11, 571 - 581

94. Kubicek-Pranz, E.M., Gsur, A., Hayn, M., Kubicek, C.P. (1991) Characterization of commercial Trichoderma reeseicellulase preparations by denaturing electrophoresis (SDS-PAGE) and immunostaining using monoclonal antibodies. Biotechnol. Appl. Biochem.14, 317 - 323

95. Szakmary, K., Wottawa, A., Kubicek, C.P. (1991) Origin of oxidized cellulose degradation products and mechanism of their promotion of cellobiohydrolase I biosynthesis in Trichoderma reesei. J. Gen. Microbiol. 137, 2873 - 2878

1992

96. Morawetz, R., Gruber, F., Messner, R., Kubicek, C.P. (1992) Presence, transcription and translation of cellobiohydrolase genes in several Trichoderma species. Curr Genet 21, 31 - 36

97. Meyer, W., Morawetz, R., Börner, T., Kubicek, C.P. (1992) The use of DNA-fingerprint analysis in classification of some species of the Trichoderma aggregate. Curr. Genet. 21, 27 - 30

98. Lu,Y., Mach. R.L., Affenzeller, K.M., Kubicek, C.P. (1992) Regulation of a--aminoadipate reductase from Penicillium chrysogenum in relation to the flux from a--aminoadipate into penicillin biosynthesis. Can. J. Microbiol. 38, 758 - 763

99. Seiboth, B., Messner, R., Gruber, F., Kubicek, C.P. (1992) Disruption of the Trichoderma reesei cbh2 gene coding for cellobiohydrolase II leads to a delay in the triggering of cellulase formation by cellulose. J. Gen. Microbiol. 138, 1259 - 1264

100. Gamerith, G., Groicher, R., Zeilinger, S., Herzog, P., Kubicek, C.P. (1992) Formation of cellulase-poor xylanases by Trichoderma reesei RUT C-30 on hemicellulose wastes from viscose fiber production. Appl. Microbiol. Biotechnol. 38, 315 - 322

101. Harmsen, H.J.M., Kubicek-Pranz, E.M., Röhr, M., Visser, J., and Kubicek, C.P. (1992) Regulation of 6-phosphofructo-2-kinase from the citric acid accumulating fungus Aspergillus niger. Appl. Microbiol. Biotechnol. 37, 784 - 788

102. Haab, D., Gassner, B., Kubicek, C.P. (1992) The protein hypersecretory Trichoderma reesei mutant RUT C-30 displays increased ethanol and polyene resistance. J. Biotechnol. 29, 97 - 108

103. Peterbauer, C.K., Heidenreich, E., Baker, R., Kubicek, C.P. (1992) Effect of benomyl and benomyl-resistance on cellulase formation by Trichoderma reesei and Trichoderma harzianum. Can. J. Microbiol. 38, 1292 - 1297

104. Stangl, H., Gruber, F., Kubicek, C.P. (1992) Characterization of the Trichoderma reesei cbh2 promoter. Curr. Genet. 23, 115 - 122

105. Kubicek, C.P., Messner, R., Gruber, F., Mach, R.L., Kubicek-Pranz, E.M. (1992) The Trichoderma Cellulase regulatory puzzle: from the interior life of a secretory fungus. Enzyme Microb. Technol. 15, 90 - 99

106. Törrönen, A., Mach, R.L., Messner, R., Gonzalez, R., Kalkkinen, N., Harkki, A., Kubicek, C.P. (1992) The two major xylanases of Trichoderma reesei: characterization of both proteins and genes. Bio/Technol. 10, 1461 - 1465

1993

107. Kurzatkowski, W., Solecka, J., Filipek, J., Rozbicka, R., Messner, R., Kubicek, C.P. (1993) Ultrastructural localization of cellular compartments involved in secretion of the low molecular weight, alkaline xylanase by Trichoderma reesei. Arch. Microbiol. 159, 417 - 422

108. Arisan-Atac, I., Hodits, R., Kristufek, D., Kubicek, C.P. (1993) Purification and characterization of a ß-mannanase from Trichoderma reesei RUT C-30. Appl. Microbiol. Biotechnol. 39, 58 - 62

109. Lendenfeld, T., Ghali, D., Wolschek, M., Kubicek-Pranz, E.M., Kubicek, C.P. (1993) Subcellular compartmentation of penicillin biosynthesis in Penicillium chrysogenum. The amino acid precursers are derived from the vacuole. J. Biol. Chem. 268, 665 - 671

110. Schindler, M., Mach, R.L., Vollenhofer, S., Hodits, R., Gruber, F., Visser, J., De Graaff, L., Kubicek, C.P. (1993) Characterization of the pyruvate kinase gene (pki1) of Trichoderma reesei. Gene 130, 271 - 275

111. Zeilinger, S., Kristufek, D., Arisan-Atac, I., Hodits, R., Kubicek, C.P. (1993) Conditions for formation, purification and characterization of an a--galactosidase of Trichoderma reesei RUT C-30.Appl. Environ. Microbiol. 59, 1347 - 1353

112. Kubicek, C.P., Messner, R., Gruber, F., Mandels, M., Kubicek-Pranz, E.M. (1993) Triggering of Cellulase Biosynthesis in Trichoderma reesei: involvement of a constitutive, sophorose-inducible, glucose-inhibited ß-diglucoside permease. J. Biol. Chem. 268, 19364 - 19368

113. Törrönen, A., Kubicek, C.P., Henrissat, B. (1993) Amino acid sequence similarities between low molecular weight endo-ß-1,4-xylanases and family H cellulases revealed by clustering analysis. FEBS Letts. 321, 135 - 139

1994

114. Kristufek, D., Hodits, R., Kubicek, C.P. (1994) Coinduction of a-L-arabinofuranosidase and a-D-galactosidase formation in Trichoderma reesei RUT C-30. FEMS Microbiol. Letts. 115, 259 - 264

115. Mach, R.L., Schindler,M., Kubicek, C.P. (1994) Transformation of Trichoderma reesei based on hygromycin resistance using homologous expression signals. Curr. Genet. 25, 567 - 570

116. Steinböck, F., Choojun,S., Held, I., Roehr, M., Kubicek, C.P. (1994) Characterization and regulatory properties of a single hexokinase from the citric acid accumulating fungus Aspergillus niger. Biochim. Biophys. Acta 1200, 215 - 223

117. Heidenreich, E.J., Kubicek, C.P. (1994)Sequence of the pyr4 gene encoding orotidine-5-phosphate decarboxylase from the biocontrol fungus Trichoderma harzianum. Gene 147, 151 - 152

118. Morawetz, R., Mischak, H., Goodnight, J., Lendenfeld, T., Mushinsky, J.F., Kubicek, C.P. (1994) A protein-kinase encoding gene, pkt1, from Trichoderma reesei, homologous to the yeast YPK1 and YPK2(YKR2) genes. Gene 146, 309 - 310

119. Schirmböck, M., Lorito, M., Wang, Y.-L., Hayes, C.K., Arisan-Atac, I., Scala, F., Harman, G.E., Kubicek, C.P. (1994) Molecular mechanisms involved in biocontrol by Trichoderma harzianum: co-induction and synergism of hydrolytic enzymes and pentaibol antibiotics. Appl. Environ. Microbiol. 60, 4364 - 4370

1995

120. Kristufek, D., Zeilinger, S., Kubicek, C.P. (1995) Regulation of ß-xylosidase formation by xylose in Trichoderma reesei Appl Microbiol Biotechnol. 42, 713 - 717

121. Maringer, U., Wong, K.K.Y., Saddler, J.N., Kubicek, C.P. (1995) A functional comparison of two pairs of ß-1,4-xylanases from Trichoderma harzianum E58 and Trichoderma reesei RUT C-30. Biotechnol. Appl. Biochem. 21, 49 - 65

122. Arisan-Atac, I., Heidenreich, E., Kubicek, C.P. (1995) Randomly amplified polymorphic DNA fingerprinting identifies subgroups of Trichoderma viride and other Trichoderma sp. capable of chestnut blight biocontrol. FEMS Microbiol. Letts. 126, 249 - 256

123. Mach, R.L., Seiboth, B., Myasnikov, A., Gonzalez, R., Strauss, J., Harkki, A.M., Kubicek, C.P. (1995) The bgl1 gene of Trichoderma reesei QM 9414 encodes an extracellular, cellulose-inducible ß-glucosidase involved in cellulase induction by sophorose. Mol. Microbiol. 16, 687 - 697

124. Strauss, J., Mach, R.L., Zeilinger, S., Hartler, G., Stöffler, G., Wolschek, M., Kubicek, C.P. (1995) Cre1, the carbon catabolite repressor protein from Trichoderma reesei. FEBS Letts. 376, 103 - 107

125. Rath, H., Messner, R., Kosma, P., Altmann, F., März, L., Kubicek, C.P. (1995) The a-D-mannan core of a complex cell-wall heteroglycan of Trichoderma reesei is responsible for ß-glucosidase activation. Arch. Microbiol. 164, 414 - 419

1996

126. Haudek, S.B., Gruber, F., Kreuzinger, N., Göbl, F., Kubicek, C.P. (1996) Strain typing of ectomycorrhizal basidiomycetes from subalpine Tyrolean forest areas. Mycorrhiza 6, 35 - 41

127. Morawetz, R., Lendenfeld, T., Mischak, H., Mühlbauer, M., Gruber, F., Goodnight, J., De Graaff, L., Visser, J., Mushinski, J.F., Kubicek, C.P. (1996) Cloning and characterization of the pkc1 and pkcA (protein kinase C-homologues encoding) genes of Trichoderma reesei and Aspergillus niger. Mol. Gen. Genet. 250, 17 - 28

128. Torres, N.V., Riol-Cimas, J.M., Wolschek, M., Kubicek, C.P. (1996) Glucose transport by Aspergillus niger: the low affinity carrier is only formed during growth on high glucose concentrations. Appl. Microbiol. Biotechnol. 44, 790 -794

129. Lorito, M., D’Ambrosio, M.D., Woo, S.L., Kubicek, C.P., Harman, G.E., Hayes, C.K., Scala, F. (1996) Synergistic interaction between cell wall degrading enzymes and membrane-affecting compounds. Mol Plant Microbe Interact. 9, 206 - 213

130. Kuhls, K., Lieckfeldt, E., Samuels, G.J., Kovacs, W., Meyer, W., Petrini, O., Gams, W., Börner, T., Kubicek, C.P. (1996) Molecular evidence that the asexual industrial fungus Trichoderma reesei is a clonal derivative of the ascomycete Hypocrea jecorina. Proc. Natl. Acad. Sci. USA 93, 7755 - 7760

131. Kubicek, C.P., Bölzlbauer, U.M., Kovacs, W., Mach, R.L., Kuhls, K., Lieckfeldt, U., Börner, T., Samuels, G.J. (1996) Cellulase formation by species of Trichoderma sect. Longibrachiatum and of Hypocrea spp. with anamorphs referable to Trichoderma sect.Longibrachiatum. Fung. Biol. Genet.. 20, 105 - 114

132. Kubicek, C.P. (1996) Biotechnological Developments in Austria. CRC Crit. Rev. Biotechnol. 16, 217 - 255

133. Arisan-Atac, I., Wolschek, M., and Kubicek, C.P. 1996. Trehalose-6-phosphate synthase A affects citrate accumulation by Aspergillus niger under conditions of high glycolytic flux. FEMS Microbiol. Letts. 140, 77 - 83

134. Kurzatkowski, W., Törrönen, A., Filipek, J., Mach, R.L., Herzog, P., Sowka, S., and Kubicek, C.P. (1996) Glucose-induced secretion of Trichoderma reesei xylanases. Appl. Environ. Microbiol. 62, 2859 - 2865

135. Zeilinger, S., Mach, R.L., Schindler, M., Herzog, P., and Kubicek, C.P. 1996. Differential induction of two xylanases in Trichoderma reesei. J. Biol. Chem. 271, 25624 - 25629

136. Arisan-Atac, I., and Kubicek, C.P. (1996) Glycerol is not an initiator of mitochondrial citrate oxidation by Aspergillus niger. Microbiol. (UK) 142, 2937 - 2942

137. Kreuzinger, N., Podeu, R., Gruber, F., Göbl, F., and Kubicek, C.P. (1996) Identification of some ectomycorrhizal basidiomycetes by PCR amplification of their gpd (glyceraldehyde-3-phosphate dehydrogenase) genes. Appl. Environ. Microbiol. 62, 3432 - 3438

138. Peterbauer, C.K., Lorito, M., Hayes, C.K., Harman, G.E., and Kubicek, C.P. (1996) Molecular cloning and expression of the nag1 gene (N-acetyl-ß-D-glucosaminidase encoding gene) from Trichoderma harzianum P1. Curr. Genet. 30, 325 - 331

139. Mach, R.L., Strauss, J., Zeilinger, S., Schindler, M., and Kubicek, C.P. (1996) Carbon catabolite repression of xyn1 (xylanase I-encoding) gene expression in Trichoderma reesei. Mol. Microbiol. 21, 1273 - 1281

140. Lorito, M., Mach, R.L., Sposato, P., Strauss, J., Peterbauer, C.K., and Kubicek, C.P. (1996) Mycoparasitic interaction relieves binding of the Cre1 carbon catabolite repressor protein to promoter sequences of the ech-42 (endochitinase encoding) gene in Trichoderma harzianum. Proc. Natl. Acad. Sci. USA 93, 14868 - 14872

141. Lorito, M., Farkas, V., Rebuffat, S., Bodo, B., Kubicek, C.P. (1996) Cell wall synthesis is a major target of mycoparasitic antagonism by Trichoderma harzianum. J. Bacteriol. 178,6382 - 6385

1997

142. Herrmann, M.C., Vrsanska, M., Jurickova, M., Hirsch, J., Biely, P., Kubicek, C.P. (1997) The ß-D-xylosidase of Trichoderma reesei is a multifunctional ß-D-xylan-xylohydrolase. Biochem. J. 321, 375 - 381

143. Wolschek, M.F., Kubicek, C.P. (1997) The filamentous fungus Aspergillus niger contains two „differentially-regulated“ trehalose-6-phosphate synthase encoding genes (tpsA, tpsB). J. Biol. Chem. 272, 2729 - 2735

144. Netik, A., Torres, N.D., Riol-Cimas, J.M., and Kubicek, C.P. (1997) Uptake and secretion of citric acid by Aspergillus niger is reciprocally regulated by manganese ion. Biochim. Biophys. Acta 1327, 287 - 294

145. Turner, D., Kovacs, W., Kuhls, K., Lieckfeldt, E., Peter, B., Arisan-Atac, I., Strauss, J., Samuels, G.J., Börner, T., and Kubicek, C.P. (1996) Biogeography and phenotypic variation in Trichoderma sect. Longibrachiatum and associated Hypocrea species. Mycol. Res. 101, 449-459

146. Kuhls, K., Lieckfeldt, E., Samuels, G.J., Meyer, W., Kubicek, C.P., and Börner, T. (1997) Revision of Trichoderma sect. Longibrachiatum including related teleomorphs based on analysis of ribosomal DNA internal transcribed spacer sequences. Mycologia 89, 442 - 460

147. Seiboth, B., Hakola, S., Mach, R.L., Suominen, P., and Kubicek, C.P. (1997) Role of four major cellulases in triggering of cellulase gene expression by cellulose in Trichoderma reesei. J. Bacteriol. 179, 5318 - 5320

1998

148. Lendenfeld, T., and Kubicek, C.P. (1997) Characterization and properties of protein kinase C from the filamentous fungus Trichoderma reesei. Biochem. J. 330, 689 - 694

149. Kindermann, J., El-Ayouti, Y., Samuels, G.J., and Kubicek, C.P. (1998) Molecular phylogeny of the genus Trichoderma based on the sequence of the internal transcribed spacer region 1 of the rDNA cluster. Fungal Genet. Biol. 24: 298 - 309

150. Samuels, G.J., Petrini, O., Kuhls, K., Lieckfeldt, E., and Kubicek, C.P. (1998) Hypocrea and Trichoderma sect. Longibrachiatum. Stud. Mycol. 41, 1 - 54

151. Goller, S.P., Gorfer, M., Kubicek, C.P. (1998) Trichoderma reesei prs12 encodes a stress- and unfolded-protein-response-inducible regulatory subunit of the fungal 26S proteasome. Curr. Genet. 33, 284 - 290

152. Mach, R.L., Zeilinger, S., Kristufek, D., Kubicek, C.P. (1998) Ca2+-calmodulin antagonists intefer with xylanase formation and secretion in Trichoderma reesei. Biochim. Biophys. Acta 1403, 281 - 289

153. Goller SP, Schoisswohl D, Baron M, Parriche M, Kubicek CP. (1998) Role of endoproteolytic dibasic proprotein processing in maturation of secretory proteins in Trichoderma reesei. Appl Environ Microbiol. 64, 3202 - 3208.

154.Zeilinger S, Mach RL, Kubicek CP. (1998) Two adjacent protein binding motifs in the cbh2 (cellobiohydrolase II-encoding) promoter of the fungus Hypocrea jecorina (Trichoderma reesei) cooperate in the induction by cellulose. J Biol Chem. 273, 34463 - 24471.

155. Wolschek MF, Narendja F, Karlseder J, Kubicek CP, Scazzocchio C, Strauss J. (1998) In situ detection of protein-DNA interactions in filamentous fungi by in vivo footprinting. Nucleic Acids Res. 26, 3862 - 3864

1999

156. Karaffa L, Sandor E, Kozma J, Kubicek CP, Szentirmai A. (1999) The role of the alternative respiratory pathway in the stimulation of cephalosporin C formation by soybean oil in Acremonium chrysogenum. Appl Microbiol Biotechnol. 51: 633 - 638.

157. Kruszewska JS, Butterweck AH, Kurzatkowski W, Migdalski A, Kubicek CP, Palamarczyk G. (1999) Overexpression of the Saccharomyces cerevisiae mannosylphosphodolichol synthase-encoding gene in Trichoderma reesei results in an increased level of protein secretion and abnormal cell ultrastructure. Appl Environ Microbiol. 65: 2382 - 2387.

158. Zeilinger S, Galhaup C, Payer K, Woo SL, Mach RL, Fekete C, Lorito M, Kubicek CP. (1999) Chitinase gene expression during mycoparasitic interaction of Trichoderma harzianum with its host. Fungal Genet Biol. 26: 131 - 140.

159.Mach RL, Peterbauer CK, Payer K, Jaksits S, Woo SL, Zeilinger S, Kullnig CM, Lorito M, Kubicek CP. (1999) Expression of two major chitinase genes of Trichoderma atroviride (T. harzianum P1) is triggered by different regulatory signals. Appl Environ Microbiol. 65:1858 - 1863.

160. Strauss J, Horvath HK, Abdallah BM, Kindermann J, Mach RL, Kubicek CP. (1999) The function of CreA, the carbon catabolite repressor of Aspergillus nidulans, is regulated at the transcriptional and post-transcriptional level. Mol Microbiol. 32: 169 - 178.

2000

161. Lieckfeldt E, Kullnig CM, Samuels GJ, Kubicek CP (2000) Sexually competent, sucrose- and nitrate-assimilating strains of Hypocrea jecorina (Trichoderma reesei, Hypocreales) from South American soils. Mycologia 92, 374 - 380

162. Zeilinger S, Haller M, Mach R, Kubicek CP. (2000) Molecular characterization of a cellulase-negative mutant of Hypocrea jecorina. Biochem Biophys Res Commun. 277: 581 - 588.

163.Kullnig C, Mach RL, Lorito M, Kubicek CP. (2000) Enzyme diffusion from Trichoderma atroviride (= T. harzianum P1) to Rhizoctonia solani is a prerequisite for triggering of Trichoderma ech42 gene expression before mycoparasitic contact. Appl Environ Microbiol. 66: 2232 - 2234.

164.Abdallah BM, Simoes T, Fernandes AR, Strauss J, Seiboth B, Sa-Correia I, Kubicek CP. (2000) Glucose does not activate the plasma-membrane-bound H+-ATPase but affects pmaA transcript abundance in Aspergillus nidulans. Arch Microbiol. 174: 340 - 345.

165. Kullnig, C.M., Szakacs, G. and Kubicek, C.P. (2000) Molecular identification of Trichoderma species from Russia, Siberia and the Himalaya. Mycol. Res. 104, 1117 - 1125

2001

166.Zeilinger S, Ebner A, Marosits T, Mach R, Kubicek CP. (2001) The Hypocrea jecorina HAP 2/3/5 protein complex binds to the inverted CCAAT-box (ATTGG) within the cbh2 (cellobiohydrolase II-gene) activating element. Mol Genet Genomics. 266: 56 - 63.

167. Punt PJ, Seiboth B, Weenink XO, van Zeijl C, Lenders M, Konetschny C, Ram AF, Montijn R, Kubicek CP, van den Hondel CA. (2001) Identification and characterization of a family of secretion-related small GTPase-encoding genes from the filamentous fungus Aspergillus niger: a putative SEC4 homologue is not essential for growth. Mol Microbiol. 41: 513 - 525.

168. de las Mercedes Dana M, Limon MC, Mejias R, Mach RL, Benitez T, Pintor-Toro JA, Kubicek CP. (2001) Regulation of chitinase 33 (chit33) gene expression in Trichoderma harzianum. Curr Genet. 38: 335 - 342.

169. Hicks J, Lockington RA, Strauss J, Dieringer D, Kubicek CP, Kelly J, Keller (2001) N. (2001) RcoA has pleiotropic effects on Aspergillus nidulans cellular development. Mol Microbiol. 39: 1482 - 1493.

170. Lieckfeldt, E., Kullnig, C. M., Kubicek, C. P., Samuels, G. J. & Börner, T. (2001) Trichoderma aureoviride: phylogenetic position and characterization. Mycological Research 105, 313-322

171. Kubicek CP, Mach RL, Peterbauer CK, Lorito M (2001) Trichoderma: from genes to biocontrol. J Plant Pathol 83, 11 - 23

Kullnig CM, Krupica T, Woo SL, Mach RL, Rey M, Benitez T, Lorito M, Kubicek CP. Confusion abounds over identity of Trichoderma biocontrol isolates. Mycol Res. 2001;105:769–772.

2002

172. Peterbauer CK, Brunner K, Mach RL, Kubicek CP (2002) Identification of the N-acetyl-D-glucosamine-inducible element in the promoter of the Trichoderma atroviride nag1 gene encoding N-acetyl-glucosaminidase. Mol Genet Genomics.267: 162 - 170.

173. Seiboth B, Hofmann G, Kubicek CP. (2002) Lactose metabolism and cellulase production in Hypocrea jecorina: the gal7 gene, encoding galactose-1-phosphate uridylyltransferase, is essential for growth on galactose but not for cellulase induction. Mol Genet Genomics. 267: 124 - 132.

174. Peksel A, Torres NV, Liu J, Juneau G, Kubicek CP. (2002) 13C-NMR analysis of glucose metabolism during citric acid production by Aspergillus niger. Appl Microbiol Biotechnol. 58: 157 - 163.

175. Cziferszky A, Mach RL, Kubicek CP. (2002) Phosphorylation positively regulates DNA binding of the carbon catabolite repressor Cre1 of Hypocrea jecorina (Trichoderma reesei). J Biol Chem. 277: 14688 - 14694.

176. Peterbauer CK, Litscher D, Kubicek CP (2002)The Trichoderma atroviride seb1-(stress response element binding) gene encodes an AGGGG-binding protein which is involved in osmotic stress response. Mol. Genet. Genomics, 268: 223 - 231

177. Kullnig-Gradinger CM, Szakacs G, Kubicek (2002) Phylogeny and evolution of the genus Trichoderma: a multigene approach. Mycol Res, 106: 757 - 767

178. Adler, A., Lew, H., Brunner, S., Oberforster, M., Hinterholzer, M., Kullnig-Gradinger, C.M., Mach, R.L., Kubicek, C.P. (2002) Fusaria in Austrian cereals – change in species and toxin spectrum. J. Appl. Genet. 43A: 11 – 16

179. Fekete, E., Karaffa, L., Sandor, E., Seiboth, B., Biro, S., Szentirmai, A., Kubicek, C.P. (2002) Regulation of formationof the intracellular ß-galactosidase activity of Aspergillus nidulans. Arch. Microbiol., 179: 7 - 14

180. Seiboth, B., Karaffa, L., Sandor, E., Kubicek, C.P. (2002) The Hypocrea jecorina gal10 (UDP-glucose-4-epimerase-encoding) gene differs from the yeast homologue in structure, genomic organization and expression. Gene, 295: 143 - 149

2003

181. Würnleithner, E., Pera, L., Wacenovsky, C., Cziferszky, A., Zeilinger, S., Kubicek, C.P. , Mach, R.L. (2003) Transcriptional regulation of xyn2 (xylanase II-encoding) in Hypocrea jecorina. Eucaryot. Cell 2, 150 - 158

182. Kubicek, C.P., Bissett, J., Kullnig-Gradinger, C.M., Druzhinina, I.S., Szakacs, G. (2003) Genetic and metabolic diversity of Trichoderma: a case study on South-East Asian isolates. Fungal Genet Biol. 38: 310 - 317

183. Karaffa, L., Kubicek, C.P. (2003) Aspergillus niger citric acid accumulation – do we understand this black box well? Invited Review. Appl Microbiol Biotechnol. 61: 189 - 196

184. Schmoll M, Kubicek CP (2003) Regulation of Trichoderma cellulase formation: lessons in molecular biology from an industrial fungus. Invited review. Acta Microbiol Immunol Hungarica, 50:125-45.

185. Brunner K, Montero M, Mach RL, Peterbauer CK, Kubicek CP (2003) Expression of the ech42 (endochitinase) gene of Trichoderma atroviride under carbon starvation is antagonized via a BrlA-like cis-acting element. FEMS Microbiol Letts 218, 259 - 264

186. Wuczkowski M, Druzhinina I, Gherbawy Y, Klug B, Prillinger HJ, Kubicek CP (2003) Species pattern and genetic diversity of Trichoderma in a mid-European, primeval floodplain-forest. Microbiol Res 158:125-33

187. Brunner K, Peterbauer CK, Mach RL, Lorito M, Zeilinger S, Kubicek CP (2003) The Nag1 N-acetylglucosaminidase of Trichoderma atroviride is essential for chitinase induction by chitin and of major relevance to biocontrol. Curr Genet, 43: 289-95

188. Czifersky A, Seiboth B, Kubicek CP (2003) The Snf1 kinase of the filamsntous fungus Hypocrea jecorina phosphorylates regulation-relevant serine residues in the yeast carbon catabolite repressor Mig1 but not in the filamentous fungal counterpart Cre1. Fungal Genet Biol, 40:166-75

189. Bisset, J., Szakacs, G., Nolan, C. A., Druzhinina, I., Gradinger C. M., Kubicek, C.P. (2003) New species of Trichoderma from Asia, Canadian Journal of Botany, 81, 570 - 586

190. Seiboth, B., Hartl, L., Pail, M. and Kubicek, C. P. (2003) D-Xylose metabolism in Hypocrea jecorina: Loss of the xylitol dehydrogenase step can be partially compensated for by lad1-encoded L-arabinitol-4-dehydrogenase. Eukaryot. Cell 2, 867-875.

191. Zeilinger, S., Schmoll, M., Pail, M., Mach, R.L., Kubicek, C.P. (2003) Nucleosome transactions on the Hypocrea jecorina (Trichoderma reesei) cellulase promoter cbh2 associated with cellulase induction.
Mol Genet Genomics. 270:46-55.

2004

192. Seiboth, B., L. Hartl, M. Pail, E. Fekete, L. Karaffa, and C. P. Kubicek. (2004) The galactokinase of Hypocrea jecorina is essential for cellulase induction by lactose but dispensable for growth on d-galactose. Mol Microbiol 51:1015-25.

193. Fekete, E., Karaffa, L., Sandor, E., Banyai, I., Seiboth, B., Gyemant, G., Sepsi, A., Szentirmai, A. and Kubicek, C.P. (2004) The alternative D-galactose degrading pathway of Aspergillus nidulans proceeds via L-sorbose. Arch. Microbiol. 181, 35-44190.

194. Kraus, G., Druzhinina, I., Bissett, J., Prillinger, H.J., Szakacs, G., Gams, W. and Kubicek, C.P. (2004) Trichoderma brevicompactum sp. nov. Mycologia 96, 1057 - 1071

195. Lu, B., Druzhinina, I., Fallah, P., Chaverri, P., Gradinger, C., Kubicek, C. P. and Samuels, G.J. (2004) Hypocrea/Trichoderma species with pachybasium-like conidiophores: teleomorphs for T. minutisporum and T. polysporum, and their newly discovered relatives. Mycologia 96, 310 - 342

196. Gherbawy, Y., Druzhinina, I., Shaban, G.M., Wuczkowsky, M., Yaser, M., El-Naghy, M.A., Prillinger, H.J., Kubicek , C.P. (2004) Trichoderma populations from alkaline agricultural soil in the Nile valley, Egypt, consist of only two species. Mycol. Prog. 3, 211 - 218

197. Pail, M., Peterbauer, T., Seiboth, B., Hametner, C., Druzhinina I., and Kubicek, C.P. (2004) The metabolic role and evolution of L-arabinitol 4-dehydrogenase of Hypocrea jecorina. Eur. J. Biochem. 271, 1864 - 1872

198. Mach, R.L., Kullnig-Gradinger, C.M., Farnleitner, A.H., Reischer, G., Adler, A., Kubicek, C.P. (2004) Specific detection of Fusarium langsethiae and related species by DGGE and ARMS-PCR of a ß-tubulin (tub1) gene fragment. International Journal of Food Microbiology 95, 333-39

199. Yli-Mattila, T., Mach, R.L., Alekhina, I.A., Bulat, S.A., Koskinen, S., Kullnig-Gradinger, C.M., Kubicek, C.P., Klemsdal, S. (2004) Phylogenetic relationship of Fusarium langsethiae to Fusarium poae and Fusarium sporotrichioides as inferred by IGS, ITS, ß-tubulin sequences and UP-PCR hybridization analysis. International Journal of Food Microbiology 95: 267 - 285

200. Ilyés, H., Fekete, E., Karaffa, L., Fekete, É., Sándor, E., Szentirmai, A., Kubicek, C.P. (2004) CreA-mediated carbon catabolite repression of ß-galactosidase formation in Aspergillus nidulans is growth rate dependent. FEMS Microbiology Letts. 235, 147 - 151

201. Schmoll, M., Zeilinger, S., Mach, R.L. , Kubicek, C.P. (2004) Cloning of genes expressed early during cellulase induction in Hypocrea jecorina by a rapid subtraction hybridization approach. Fungal Genetics and Biology 41, 877 - 887

202. Druzhinina, I., Chaverri, P., Fallah, P., Kubicek, C.P., Samuels, G.J. (2004) Hypocrea flavoconidia, a new species with yellow conidia from Costa Rica. Studies in Mycology 51,401-407

203. Seidl, V., Seiboth, B., Karaffa, L., Kubicek, C.P. (2004) The fungal STRE-element-binding protein Seb1 is involved but not essential for glycerol dehydrogenase (gld1) gene expression and glycerol accumulation in Trichoderma atroviride during osmotic stress. Fungal Genetics and Biology 41, 1132 - 1139

2005

204. Druzhinina, I. and Kubicek, C.P. (2005) Species concepts and biodiversity in Trichoderma and Hypocrea: from species aggregates to species clusters? Invited Review. J. Zeihjang Univ. Sci. B 6: 100 - 112

205. Seiboth, B., Hartl, L., Salovuori, N., Lanthaler, K., Robson, G.D., Vehmaanperä, J., Penttilä M.E., and Kubicek, C.P. (2004) The role of the bga1-encoded extracellular β-galactosidase of Hypocrea jecorina in cellulase induction by lactose. Appl. Environ. Microbiol. 71, 851 – 857

206. Kopchinskiy, A., Komoń, M., Kubicek, C.P. and Druzhinina, I.S. (2005) TrichoBLAST: a multiloci database of phylogenetic markers for Trichoderma and Hypocrea powered by sequence diagnosis and similarity search tools. Mycol. Res. 109, 658 - 660

207. Druzhinina, I., Koptchinski, A., Komon, M., Bissett, J., Szakacs, G. and Kubicek, C.P. (2005) An oligonucleotide barcode for species identification in Trichoderma. Fungal Genet. Biol. 42: 813 - 828

208. Schmoll, M. , Kubicek, C.P. (2005) ooc1, a unique gene expressed only during growth of Hypocrea jecorina (anamorph: Trichoderma reesei) on cellulose. Curr. Genet. 38: 126 - 133

209. Brunner, K., Zeilinger, S., Ciliento, R., Woo, S.L., Lorito, M., Kubicek, C.P., Mach, R. L. (2005) Improvement of the fungal biocontrol agent Trichoderma atroviride to enhance both antagonism and induction of plant systemic response. Appl. Environ. Microbiol. 71, 3959 - 3965

210. Jaklitsch, W.M., Komon, M., Kubicek, C.P., Druzhinina, I. (2005) Hypocrea voglmayri, a new Hypocrea species from the Austrian Alps, defines a new phylogenetic clade in Trichoderma. Mycologia, 97: 1391 - 1404

211. Zhang, C.L., Druzhinina, I.S., Kubicek, C.P., Xu, T. (2005)1Biodiversity of Trichoderma in China: evidence for a North to South difference of species distribution in East Asia. FEMS Microbiol. Letts. 251: 251 - 257

212. Seidl, V., Huemer, B., Seiboth, B., Kubicek, C.P. (2005) A complete survey of Trichoderma chitinases reveals a new family 18 subgroup. The FEBS J. 272: 5923 - 5939

213. Schmoll, M., Franchi, L., Kubicek, C.P. (2005) ENVOY, a PAS/LOV domain protein of Hypocrea jecorina (Trichoderma reesei), modulates cellulase gene transcription in response to light. Eukaryot. Cell. 4: 1998 - 2007

2006

214. Druzhinina, I.S., Schmoll, M., Seiboth, B. and Kubicek, C.P. (2006) Global Carbon Utilization Profiles of Wild-type Strains, Mutantsand Transformants of Hypocrea jecorina. Appl. Environ. Microbiol. 72: 2126-2133

215. Seidl, V., Schmoll, M., Scherm, B., Balmas, V., Seiboth, B., Migheli, Q., Kubicek, C.P. (2006) Antagonism of Pythium Blight of Zucchini by Hypocrea jecorina Does Not Require Cellulase Gene Expression But Is Improved by Carbon Catabolite Derepression. FEMS Microbiol. Letts. 257: 145-151

216. Karaffa, L., Fekete, E., Gamauf, C., Szentirmai, A., Kubicek, C.P. , Seiboth, B. (2006) d-galactose induces cellulase gene expression in Hypocrea jecorina at low growth rates. Microbiology (UK) 152: 1507-1514.

217. Druzhinina, I.S., Koptchinskiy, A., Kubicek, C.P. (2006) The first one hundered Trichoderma species characterized by molecular data. Mycoscience 47: 55 - 64

218. Seidl, V., Marchetti, M. Schandl, R. Allmaier G. and Kubicek, C.P. (2006) Epr1, the major secreted protein of Hypocrea atroviridis on glucose is a member of a strongly conserved protein family comprising plant defense response elicitors. FEBS J 273: 4346-4359.

219. Seidl, V., Druzhinina, I.S. and Kubicek C.P. (2006). A screening system for carbon sources enhancing ß-N-acetylglucosaminidase formation in Hypocrea atroviridis (Trichoderma atroviride). Microbiology (UK) 152: 2003-2012.

220. Rauscher, R., Würnleitner, E., Wacenovsky, C., Aro, N., Stricker, A.R., Zeilinger, S., Kubicek, C.P., Penttila, M., and Mach, R.L. (2006) Transcriptional regulation of xyn1, encoding xylanase I, in Hypocrea jecorina. Eukaryot Cell. 5: 447-456.

221. Jaklitsch, W.M., Komon, M., Kubicek, C.P., Druzhinina, I.S. (2006) Hypocrea crystalligena sp. nov., a common European species with a white-spored Trichoderma anamorph. Mycologia 98: 500 – 514

222.Dela Cruz TE, Schulz BE, Kubicek CP, Druzhinina IS.2006. Carbon source utilization by the marine Dendryphiella species D. arenaria and D. salina. FEMS Microbiol Ecol. 58:343-53.

2007

223.Fekete E, Karaffa L, Kubicek CP, Szentirmai A, Seiboth B (2007) Induction of extracellular ß-galactosidase (Bga1) formation by d-galactose in Hypocrea jecorina is mediated by galactitol. Microbiology (UK) 153:507-512

224. Hatvani, L., Antal, Z., Manczinger, L., Szekeres, A., Druzhinina, I.S., Kubicek, C.P., Nagy, A., Nagy, E., Vágvölgyi, E., Kredics, L. (2007) Green Mold Diseases of Agaricus and Pleurotus are Caused by Related but Phylogenetically Different Trichoderma Species. Phytopathology, 97, 532-537

225. Zhang, C.-L., Liu, S.-P., Lin, F.-C., Kubicek, C.P., Druzhinina, I.S. (2007) Trichoderma taxi sp. nov., an endophytic fungus from Chinese yew Taxus mairei, emphasizes the difficulties to phylogenetically align new species within Trichoderma/Hypocrea. FEMS Microbiol. Letts. 270: 90-96.

226. Gamauf, C., Marchetti, M., Kallio, J., Vehmaanperä, J., Allmaier, G., Kubicek, C.P., Seiboth, B. (2007) Characterization of the bga1- encoded glycosyl hydrolase family 35 β-galactosidase of Hypocrea jecorina with galacto-galactanase activity. The FEBS J. 274:1691-1700

227.Neuhof, T., Dieckmann R., Druzhinina I.S., Kubicek, C.P., Nakari-Setala, T., Penttilä, M., von Döhren, H. (2007) Direct identification of hydrophobins and their processing in Trichodermausing Intact-Cell MALDI-TOF mass spectrometry. The FEBS J. 274:841-852.

228. Kubicek, C.P., Zelazowska-Komon, M., Sandor, E. and Druzhinina, I.S. (2007) Facts and challenges in the understanding of the biosynthesis of peptaibols by Trichoderma. Chem. Biodiv. 4:1068-82

229. Seiboth, B., Pakdaman, B.S., Hartl, L. And Kubicek, C.P. (2007) Lactose metabolism in filamentous fungi: how to deal with an unknown substrate. Fungal Biol. Reviews 21: 42-48

230. Pel, H.J., de Winde JH, Archer DB, Dyer PD, Hofmann G, Schaap PJ, Turner GJ, de Vries RP, Albang R, Albermann K, Mikael R. Andersen4,Jannick D. Bendtsen9, Jacques A.E. Benen5, Marco van den Berg10,, Pedro M. Coutinho11, Mark Caddick12, Roland Contreras13, Etienne G.J. Danchin11, Alfons J.M. Debets14, Peter Dekker1, Piet W.M. van Dijck1,Alard van Dijk1, Lubbert Dijkhuizen15,16, Arnold Driessen16, Christophe d'Enfert17, Steven Geysens13, Gert Groot1, Coenie Goosen15,16, Piet W.J. de Groot18, Thomas Guillemette19, Bernard Henrissat11, MargaHerweijer1,Hans van den Hombergh1, Cees A. M. J. J. van den Hondel20, Rene vd Heijden21,Rachel M. van der Kaaij15, Frans M. Klis18, Harrie J. Kools5, Monika Schmoll22 ,Christian P. Kubicek22, Patricia A. van Kuyk20, Jurgen Lauber 23 ,Xin Lu24Marc J.E.C. van der Maarel15, Hilly Menke1, 1, Rogier Meulenberg1, Martin Mortimer12, Jens Nielsen4, Steve Oliver25, Maurien Olsthoorn1, Karoly Pal14,26, Noel M.E. van Peij1, Arthur F.J. Ram20, Ursula Rinas24, Hans Roubos1, Cees M.J. Sagt1, Jibin Sun24, David Ussery27, Janos Vargos26, Wouter Vervecken13, Peter J. I. van de Vondervoort20, Holger Wedler 19 ,Han A. B. Wösten7 ,,An-Ping Zeng24, Albert J. J. van Ooyen1, Jaap Visser28 and Hein Stam1 .Genome sequence and functional annotation of the filamentous fungal cell factory Aspergillus niger. Nature Biotechnology 25: 221-231

231. Hartl, L., Kubicek C.P. , Seiboth, B. 2007. Induction of the Leloir pathway in the fungus Hypocrea jecorina involves no transcriptional inducer function of the galactokinase. J. Biol. Chem. 282: 18654 - 18659

232. Neuhof, T., Dieckmann, R., Druzhinina, I.S., Kubicek, C.P., Von Döhren, H. 2007. Intact-Cell MALDI-TOF mass spectrometry analysis of peptaibol formation by the genus Trichoderma: can molecular phylogenic knowledge predict peptaibol structures ? Microbiol. UK 153:3417-3437

233. Seiboth, B., Gamauf, C., Pail, M., Hartl, L. and Kubicek, C.P. 2007. The major d-xylose reductase of Hypocrea jecorina is necessary for efficient pentose and lactose catabolism and for cellulase induction by lactose. Mol. Microbiol. 66:890-900

234. Nagy, V., Seidl, V., Szakacs, G., Komon-Zelazowska, M., Kubicek, C.P. and Druzhinina, I.S. 2007. Application of DNA BarCodes for screening of industrially important fungi: the haplotype of Trichoderma harzianum sensu stricto indicates superior chitinase formation. Appl. Environ. Microbiol. 73:7048-7058.

235. Komoń-Zelazowska, M., Bissett, J., Zafari D, Hatvani L, Manczinger L, Woo S, Lorito M, Kredics L, Kubicek CP and Druzhinina IS. 2007. Genetically closely related but phenotypically divergent Trichoderma species cause world-wide green mould disease in oyster mushroom farms. Appl. Environ. Microbiol. 73:7415-7426

236. Schuster A, Kubicek CP, Friedl MA, Druzhinina IS and Schmoll M. 2007. The PAS/LOV-domain protein Envoy of the fungus Hypocrea jecorina plays several light-dependent and –independent regulatory roles. BMC Genomics 4; 8:449242.

237. Komon-Zelazowska M, Neuhof T, Dieckmann R, von Döhren H, Herrera-Estrella A, Kubicek CP, Druzhinina IS. 2007. Formation of Atroviridin by Hypocrea atroviridis Is Conidiation Associated and Positively Regulated by Blue Light and the G Protein GNA3. Eukaryot Cell. 6: 2332-2342.

2008

238. Martiez D, Berka RM, Henrissat B, Saloheimo M, Arvas M, Baker SE, Chapman J, Chertkov O, Coutinho PM, Cullen D, Danchin EG, Grigoriev IV, Harris P, Jackson M, Kubicek CP, Han CS, Ho I, Larrondo LF, de Leon AL, Magnuson JK, Merino S, Misra M, Nelson B, Putnam N, Robbertse B, Salamov AA, Schmoll M, Terry A, Thayer N, Westerholm-Parvinen A, Schoch CL, Yao J, Barabote R, Nelson MA, Detter C, Bruce D, Kuske CR, Xie G, Richardson P, Rokhsar DS, Lucas SM, Rubin EM, Dunn-Coleman N, Ward M, Brettin TS.. 2008.Genome Sequence Analysis of the Cellulolytic Fungus Trichoderma reesei (syn. Hypocrea jecorina) Reveals a Surprisingly Limited Inventory of Carbohydrate Active Enzymes. Nature Biotechnology 26, 553 - 560

239. Druzhinina IS, LaFe K, Willinger B, Komoń-Zelazowska M, Ammirati J, Kubicek CP, Rogers JD. 2008. An unknown species from Hypocreaceae isolated from human lung tissue of a patient with non-fatal pulmonary fibrosis. Clin Microbiol Letts, ms in press

240. Kubicek CP, Baker S, Gamauf C, Kenerley CM and Druzhinina IS. 2008. Purifying selection and birth-and-death evolution in the class II hydrophobin gene families of the ascomycete Trichoderma/Hypocrea.BMC Evol. Biol. 10; 8:4

241. Friedl, M.A., Schmoll, M., Kubicek, C.P. and Druzhinina, I.S. 2008. Photostimulation of Hypocrea atroviridis growth occurs due to a cross-talk of carbon metabolism, blue light receptors and response to oxidative stress. Microbiol. (UK), 154:1229-41

242. Friedl MA, Kubicek CP, Druzhinina IS. 2008. Carbon source dependence of conidiation and its photostimulation in Hypocrea atroviridis. Appl Environ Microbiol 74:245-250

243. Zhang CL, Zheng BQ, Lao JP, Mao LJ, Chen SY, Kubicek CP, Lin FC. 2008. Clavatol and patulin formation as the antagonistic principle of Aspergillus clavatonanicus, an endophytic fungusof Taxus mairei. Appl Microbiol Biotechnol, 78, 833-840.

244. Seidl, V., Gamauf C, Druzhinina IS, Hartl L, Seiboth B, Kubicek CP. 2008. The Hypocrea jecorina (Trichoderma reesei) hypercellulolytic mutant RUT C30 lacks a 85 kb (29 gene-encoding) region of the wild-type genome. BMC Genomics 9:327

245. Fekete E, Seiboth B, Kubicek CP, Szentirmai A, Karaffa L. 2008. Lack of aldose 1-epimerase in Hypocrea jecorina (anamorph Trichoderma reesei): A key to cellulase gene expression on lactose. Proc Natl Acad Sci U S A. 105, 7141 - 7146

246. Zachow, C., Berg, C., Müller, H., Meincke, R., Komon-Zelazowska, M., Druzhinina, I.S., Kubicek, C.P., and Berg, G. 2008. Fungal biodiversity in the soils/rhizospheres of Tenerife (Canary Islands): relationship to vegetation zones and environmental factors. ISME 2008 Oct 2. Epub ahead of print

247. Váczy, K.Z., Sándor, E., Karaffa, L., Fekete, Er., Fekete, Ev., Árnyasi, M., Czeglédi, L., Kövics, G.J., Druzhinina, I.S., Kubicek, C.P. 2008. Botrytis cinerea populations in Hungarian vineyards consist of a strongly recombining group II phylogenetic species and a significant number of isolates containing only the transposon Flipper. Phytopathol., 98, 1312 - 1319

248. Jaklitsch, W.M., Kubicek, C.P., Druzhinina, I.S. 2008. Three green-spored species of Hypocrea with reddish-brown stromata. Mycologia 100, 796 - 815

249. Druzhinina, I.S., Komoń-Zelazowska, M., Kredics, L., Hatvani, L., Antal Z., Belayneh, T. and Kubicek, C.P. 2008. Different reproductive strategies of Hypocrea orientalis andgenetically close but clonal Trichoderma longibrachiatum, both capable to cause invasive mycoses of humans. Microbiology UK 154, 3447 - 3459

250. Kubicek CP, Komon-Zelazowska M, Druzhinina IS. 2008. Fungal genus Hypocrea/Trichoderma: from barcodes to biodiversity. J Zhejiang Univ Sci B. 9: 753 - 763.

2009

251. Migheli, Q., Balmas V., Komoń-Zelazowska, M., Scherm, B., Caria, R., Kopchinskiy, A., Kubicek C.P., Druzhinina, I.S. 2009. Soils of a Mediterranean hotspot of biodiversity and endemism (Sardinia, Tyrrhenian Islands) are inhabited by pan-European and likely invasive species of Hypocrea/Trichoderma. Environ Microbiol. 2008 Sep 1. Epub ahead of print

252. Flipphi, M., Sun, J., Robellet, X., Karaffa, L., Fekete, E., Zeng, A.P., Kubicek, C.P. 2009. Biodiversity and evolution of primary carbon metabolism in Aspergillus nidulans and other Aspergillus spp. Fungal Genet Biol., in press

253. Diego Martineza, Jean Challacombea, David Hibbettb Ingo Morgensternb Monika Schmollc, Christian Kubicekc, Angel Martinezd, Patricia Ferreirad, Francisco Ruiz-Duenasd, Phil Kerstene, Ken Hammele, Amber Vanden Wymelenbergf, Jill Gaskelle, Igor Grigorievg, Erika Lindquistg, Grzgorz Sabath, Sandra Splinter Bonduranth, Luis Larrondoi, Paulo Canessai, Jagjit Yadavj, Harshavardhan Doddapanenij, Venkataramanan Subramanianj, Antonio Pisabarrok, José L. Lavínk, José A. Oguizak, Emma Masterl, Bernard Henrissatm, Pedro Coutinhom, Paul Harrisn, Jon Karl Magnusono, Scott Bakero, Kenneth Brunoo, William Keneallyp, Patrik Hoeggerq, Ursula Kuesq, Preethi Ramiaiyan, Susan Lucasg, Asaf Salamovg, Harris Shapirog, Hank Tug, Sarah Tetern, Debbie Yavern, Tim Jamesr, Martin Mokrejss, Thomas Brettina, Dan Rokhsarg, Randy Berkan, and Dan Cullene, Genome, transcriptome, and secretome analysis of wood decay fungus Postia placenta supports unique mechanisms of lignocellulose conversion. Proc. Natl. Acad. Sci. USA, in press

254. Jennifer Russo Wortman1, Jane Mabey Gilsenan2, Vinita Joardar3, Jennifer Deegan4, John Clutterbuck5, Mikael R. Andersen6, David Archer7, Mojca Bencina8, Gerhard Braus9, Pedro Coutinho10, Hans von Doehren11, John Doonan12, Arnold Driessen13,14 , Pawel Durek11, Eduardo Espeso15, Erzebet Fekete16, Michel Flipphi 17, Carlos Garcia Estrada18, Steven Geysens19, Gustavo Goldman20, Piet de Groot21, Kim Hansen22, Steven D. Harris23, Thorsten Heinekamp24, Kerstin Helmstaedt9, Bernard Henrissat10, Gerald Hofmann6,22, Tim Homan25 , Tetsuya Horio26, Hiroyuki Horiuchi27, Steve James28, Meriel Jones29, Zsolt Karányi30, Masashi Kato31, Nancy Keller32, Diane E. Kelly33, Jan A.K.W. Kiel 34,14, Jung-Mi Kim35, Ida J. van der Klei34,14, Frans Klis21, Andriy Kovalchuk13,14, Nada Kraševec8, Christian P. Kubicek36, Karaffa Levente16, Bo Liu35, Andrew MacCabe17, Vera Meyer25, 14, Pete Mirabito37, Márton Miskei38, Magdalena Mos29, Jonathan Mullins33 , David R. Nelson39, Jens Nielsen6,40, Berl R. Oakley26, Stephen A. Osmani41, Tiina Pakula42, Andrzej Paszewski43, Ian Paulsen44, Sebastian Pilsyk43, István Pócsi38, Peter Punt45, Arthur Ram25,14, Qinghu Ren3, Geoff Robson46, Bernhard Seiboth36, Piet van Solingen47, Thomas Specht48, Jibin Sun49, Naimeh Taheri-Talesh9, Norio Takeshita50, Dave Ussery51, Patricia A. VanKuyk25, Hans Visser52, Peter van de Vondervoort53, Ronald P. de Vries54, Jonathan Walton55, Xin Xiang56, Yi Xiong41, An Ping Zeng57, Michael J. Cornell46,58, Cees van den Hondel25, 14, Jaap Visser25,59, Stephen G. Oliver60 and Geoffrey Turner. 2008. The 2008 update of the Aspergillus nidulans genome annotation: a community effort. Fungal Genet Biol., in press

255. Scherm, B., Schmoll, M., Balmas, V., Kubicek, C.P., Migheli, Q.2008. Identification of potential marker genes for Trichoderma harzianum strains with high antagonistic potential against Rhizoctonia solani by a rapid subtraction hybridization (RaSH) approach. Curr. Genet., in press

256. Schmoll M, Schuster A., de Silva RN, Kubicek CP. 2009. The G-alpha protein GNA3 of Hypocrea jecorina (anamorph Trichoderma reesei) regulates cellulase gene expression in the presence of light. Eukaryot. Cell, in press

257. Kubicek CP, Mikus M, Schuster, A., Schmoll M, Seiboth B. 2009. Metabolic engineering strategies for improvement of cellulase production by Hypocrea jecorina. Biotechnol Biofuels, in press

B. BookChapters

1. Kubicek, C.P., Röhr, M. (1982) Novel trends in physiology an technology of citric acid production. In: Overproduction of Microbial Metabolites (Krumphanzl et al., eds.) pp. 263 - 272. Academic Press London New York

2. Röhr, M., Habison, A., Kubicek, C.P. (1982) Regulation of citric acid production in Aspergillus niger. In: Advances in Biotechnology (Moo Young et al., eds.) Vol. 3, pp. 541 - 546. Pergamon Press, Toronto

3. Röhr, M., Kubicek, C.P., Kominek, J. (1983) Citric Acid. In: (H.J. Rehm, G. Reed, eds.) Biotechnology Vol. 3, pp. 420 - 454. Verlag Chemie, Weinheim

4. Röhr, M., Kubicek, C.P., Kominek, J. (1983) Gluconic Acid. In: (H.J. Rehm, G. Reed, eds.) Biotechnology Vol. 3, pp. 456 - 478. Verlag Chemie, Weinheim

5. Kubicek, C.P. (1987) Aspects of control of metabolic fluxes in microorganisms. In: (L. Alberghina, L. Frontali, G. Hamer, eds.) Physiological and genetic modulation of product formation. pp. 81 - 97. Dechema Monographs No. 105. Verlag Chemie.

6. Kubicek, C.P. (1987) The role of the citric acid cycle in fungal organic acid fermentations. In: (Weitzman, P.D.J., Kay, J., eds.) Krebs' Citric acid cycle - half a century and still turning. Biochemical Society Symposium No. 54, pp. 113 - 126. University Cambridge Press.

7. Kubicek, C.P., Hönlinger, C., Jaklitsch, W.M., Affenzeller, K., Mach, R., Gerngroß, T.-U., Lu, Y. (1990) Regulation of lysine biosynthesis in the fungus Penicillium chrysogenum.In: Amino Acids: Chemistry, Biology and Medicine (G. Lubec, G.A. Rosenthal, eds.) pp. 1029 - 1034. Escom, Leiden, NL

8. Kubicek, C.P. (1992) The cellulase proteins of Trichoderma reesei: structure, multiplicity, mode of action and regulation of formation. Adv. Biochem. Engin. Biotechnol. 45: 1 - 28

9. Röhr, M., Kominek, J., Kubicek, C.P. (1991) Organic acids and other small molecules. In: Aspergillus: The Biology and Industrial Application (J.W. Bennett, M. Klich, eds.) Butterworth Publ. pp. 91 - 131

10. Kubicek, E.M., Kubicek, C.P. (1992) Production and biosynthesis of amino acids by fungi. In: (D.K. Arora, R.P. Elander, K.G. Mukerji, eds.) Handbook of Applied Mycology Vol. 4, pp. 313 - 356. Marcel Dekker, Inc., New York - Basel - Hong Kong

11. Kubicek, C.P., Witteveen, C.F.B., Visser, J. (1994) Regulation of organic acid production by Aspergilli. In The Genus Aspergillus (K.A. Powell et al., eds.) pp. 135 - 145. Plenum Press. New York, USA

12. Röhr, M., Kubicek, C.P., Kominek, J. (1996) Citric Acid. In: (H.J. Rehm, G. Reed, A. Pühler, P. Stadler, eds.) Biotechnology (2nd ed.) Vol. 6 (M. Röhr, ed.). pp. 364 - 379. Verlag Chemie, Weinheim.

13. Röhr, M., Kubicek, C.P., Kominek, J. (1996) Gluconic Acid. In: (H.J. Rehm, G. Reed, A. Pühler, P. Stadler, eds.) Biotechnology (2nd ed.) Vol. 6 (M. Röhr, ed.). pp. 348 - 362. Verlag Chemie, Weinheim.

14. Röhr, M., Kubicek, C.P., Kominek, J. (1996) Further Organic Acids. In: (H.J. Rehm, G. Reed, A. Pühler, P. Stadler, eds.) Biotechnology (2nd ed.) Vol. 6 (M. Röhr, ed.), pp. 364 - 379. Verlag Chemie, Weinheim.

15. Kubicek, C.P. (1998) Production of Citric Acid. In: (T. Nagodawithana and G. Reed, eds.) Commercial fermentations and nutritional needs of their microorganisms. pp. 236 - 257. Esteekay Associates Inc., Milwaukee, WI.

16. Goller, S.K., Gorfer, M., Mach, R.L., Kubicek, C.P. (1998) Strategies and methods for PCR-cloning in fungi. In: Application of PCR in Mycology (P.D. Bridge, D.K. Arora, C.A. Reddy, and R.P. Elander, eds.) pp. 21 - 46. CAB International, Wallingford, UK

17. Wolschek, M.F., Kubicek, C.P. (1998) Citric acid biosynthesis and its regulation. In: Citric acid fermentation (B. Kristiansen and M. Mattey, eds.) p. 11 – 31. Taylor and Francis, London

18. Kubicek, C.P. (1998) Organic Acids. In: Basic Biotechnology, 2nd edition (C. Ratledge and B. Kristiansen, eds.) Cambridge University Press. Pp. 305 – 323.

19. Kubicek, C.P., Zeilinger, S., Mach, R.L.,a nd Strauss, J. (1998) Regulation of xylanase gene expression in Trichoderma.In: (Claeyssens, M., Nerinckx, W., and Piens, K., eds.) Carbohydrases from Trichoderma reesei and other microorganisms. Structures, biochemistry, genetics and applications. pp. 274 - 279. The Royal Soc. Chem., Cambridge, UK

20. Kubicek, C.P. (2001) Fungal Molecular Biology. In: (E. Balazs et al., eds) Biological Resource Mangement. p. 219 – 227. Springer Verlag, Berlin – Heidelberg. INRA Paris

21. Kubicek, C.P., Peterbauer, C.K., Litscher, D., Brunner, K. and Mach, R.L. (2001) Regulation of chitinase gene expression in biocontrol strains of Trichoderma. In: Chitin Enzymology 2001 (R.A.A. Muzzarelli, ed.) pp. 3 – 10. Atec Edizioni, Grottammare, Italy.

22. Kubicek, C.P. (2002) Molecular genetics of metabolite production by industrial filamentous fungi. In: (R. A. Prade, H.J. Bohnert, eds.) Genomics of Plants and Fungi. Marcel Dekker Inc. New York, NY, pp. 131 - 162.

23. Kubicek, C.P. (2002) Molecular biology of Trichoderma spp. used in biocontrol. In: (D.K. Arora, ed.) Fungal Biotechnology in Agricultural, Food and Environmental Applications. Marcel Dekker Inc., New York, NY.P. 136 - 146.

24. Kubicek, C.P. and Karaffa, L. (2004) Organic Acids. In: Basic Biotechnology, 3rd edition (C. Ratledge and B. Kristiansen, eds.) Cambridge University Press, in press

C. Published Proceedings

Jaklitsch, W.M., Kubicek, C.P. (1988) Control of flux through short metabolic pathways. In: (C. Ratledge, A. Szentirmai, G. Barabas, F. Kevei, eds.) Microbial physiology and the manufacturing industry. Proceedings of the Fourth Workshop of the Working party on Applied Biocatalysis and Microbial Physiology of the EFB. pp. 112 - 117. OMIKK, Budapest.

Kubicek, C.P., Messner, R., Fritscher, C., Strauss, J., Kubicek-Pranz, E.M. (1990) Regulatory aspects of formation and secretion of cellulases by Trichoderma reesei. In: Trichoderma reesei Cellulases: Biochemistry, Genetics, Physiology and Applications (C.P. Kubicek et al., eds.) pp. 81 - 102. Royal Society of Chemistry. Cambridge, UK

Herzog, P., Törrönen, A., Harkki, A., Kubicek, C.P. (1992) Mechanism by which xylan and cellulose trigger the biosynthesis of endoxylanase I by Trichoderma reesei. In: Xylan and xylanases. (J. Visser, M.A. Kusters-Van Someren, G. Beldman, and A.G.J. Voragen, eds.) pp. 289 - 294. Elsevier Sci. Publ. Amsterdam - London - New York - Tokyo. [ISBN 0-444-89477-2]

Törrönen, A., Affenzeller, K.A., Hofer, F., Myohanen, T.A., Blaas, D., Harkki, A., Kubicek, C.P. (1992) The major xylanase of Trichoderma reesei: purification and production of monoclonal antibodies.In: Xylan and xylanases. (J. Visser, M.A. Kusters-Van Someren, G. Beldman, and A.G.J. Voragen, eds.) pp. 501 - 504. Elsevier Sci. Publ. Amsterdam - London - New York - Tokyo. [ISBN 0-444-89477-2]

Törrönen, A., Hodits, R., Gonzalez, R., Mach, R.L., Messner, R., Kalkinnen, N., Harkki, A., Kubicek, C.P. (1992) Molecular cloning of xyn1, xyn2, and bxl1, the genes encoding the two major xylanases and ß-xylosidase from Trichoderma reesei. In: Biotechnology in the Pulp and Paper Industry. Proceedings of the 5th International Conference on Biotechnology in the Pulp and Paper Industry (M. Kuwahara, M. Shimada, eds.) pp. 447 - 452. Uni Publishers Co., Ltd. Tokyo Japan

Kubicek, C.P., Herzog, P., Kristufek, D., Hodits, R., Kubicek-Pranz, E.M., Messner, R., Törrönen, A., Harkki, A. (1992) Interrelationships and differences in the regulation of xylanase and cellulase formation by Trichoderma reesei. In: Biotechnology in the Pulp and Paper Industry. Proceedings of the 5th International Conference on Biotechnology in the Pulp and Paper Industry (M. Kuwahara, M. Shimada, eds.) pp. 383 - 388. Uni Publishers Co., Ltd. Tokyo Japan

Kubicek, C.P. (1993) From Cellulose to cellulase inducers: facts and fiction. In: Proceedings of the second TRICEL symposium on TRICHODERMA REESEI cellulases and other hydrolytic enzymes, Espoo, Finland. (P. Suominen, T. Reinikainen, eds.) Foundation of Biotechnical and Industrial Fermentation Research 8 (1993) pp. 181 - 188.

Mach,R.L., Butterweck, A., Schindler,M., Messner, R., Herzog, P.,Kubicek, C.P. (1993) Molecular regulation of formation of xylanase (XYN) I and II by Trichoderma reesei. In: Proceedings of the second TRICEL symposium on TRICHODERMA REESEI cellulases and other hydrolytic enzymes, Espoo, Finland. (P. Suominen, T. Reinikainen, eds.) Foundation of Biotechnical and Industrial Fermentation Research 8 (1993) pp. 211 - 216

Hodits, R., Butterweck, A.H., Goller, S.P., Törrönen, A., Mach, R.L., Messner, R., Harkki, A., Kubicek, C.P. (1994) Recombinant Trichoderma reesei strains producing improved and "tailor" made xylanase profiles. In: ECB6: Proceedings of the 6th European Congress on Biotechnology (L. Alberghina, L. Frontali and P. Sensi, eds.) pp. 295 - 298. Elsevier Science B.V. (Amsterdam - New York)

Herrmann, M., Kubicek, C.P. (1995) Properties and application of immobilized xylanase preparations from Trichoderma reesei. Biotechnology in the Pulp and Paper Industry. Proceedings of the 6th International Conference on Biotechnology in the Pulp and Paper Technology (E. Srebotnik and K. Messner, eds.) p. 103 - 106. Facultas Universitätsverlag, Vienna, Austria

D. Books

Kubicek, C.P., Eveleigh, D.E., Esterbauer, H., Steiner, W., Kubicek-Pranz, E.M. (1991)
Trichoderma cellulases: biochemistry, physiology. genetics and applications. Royal Chem Soc Press, Cambridge, UK. (114 pages)

Kubicek, C.P., and Harman, G.E. (1998) Trichoderma and Gliocladium. Vol. 1. Taylor & Francis, London, UK.

Harman, G.E., and Kubicek, C.P. (1998) Trichoderma and Gliocladium. Vol. 2. Taylor & Francis, London, UK.

Kubicek, C.P., and Druzhinina, I.S. (2007) The Mycota Vol. 4. Environmental and Microbial Relationships

2nd ed., XXIV, 350 p., 55 illus., Hardcover. ISBN: 978-3-540-71839-0

E. Patents

Harman, G.E., Lorito, M., Di Pietro, A., Hayes, C.K., Scala, F., and Kubicek, C.P. (2003) Combinations of fungal cell wall degrading enzymes and fungal cell membrane affecting compound. US Patent 6,512,166

Berg, A., Härtl, A., Schlegel, B., Kubicek, C.P., Kallow, W., Dieckmann, R., Erhard, M. Neuhof, T. 2004. Neue Peptaibole mit neuroleptischer Wirkung. Deutsches Patentanmeldung, Aktenzeichen DE 102 38 697.8

Microbial pesticides of Trichoderma reesei. EP 08 157 639.9

Puranen, T., Milos, K., Kubicek, C.P., Seiboth, B., Kallio, J., Veehmanperä, J. 2008. Novel pectinases of Trichoderma. EP